Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Putative transketolase central region-containing protein | PH7735_01697 | Q9R9N4 | Negative | 1834865 - 1836223 | 48359.7 |
| Major spike protein | PH7735_04103 | P03643 | Negative | 4349305 - 4349832 | 19048.7 |
| Capsid protein | PH7735_04104 | P03641 | Negative | 4349943 - 4351226 | 48485.4 |
| Dna packaging protein | PH7735_04105 | P69592 | Negative | 4351263 - 4351379 | 4227.24 |
| External scaffolding protein | PH7735_04106 | P69486 | Negative | 4351379 - 4351837 | 16938.3 |
| C | PH7735_04107 | P69172 | Negative | 4351834 - 4352094 | 10081.0 |
| Dna replication initiation protein gpa | PH7735_04108 | P03631 | Negative | 4352091 - 4353632 | 58721.8 |
| Minor spike protein | PH7735_04109 | P03646 | Negative | 4353696 - 4354544 | 30256.3 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 182 - 291 | Not Available |
| 23s ribosomal rna (partial) | Not Available | Not Available | Positive | 408 - 1674 | 18.01 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
