Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_02969 | Q3IZ78 | Positive | 3105932 - 3106963 | 37450.5 |
| succinate dehydrogenase cytochrome b556 subunit | PH7735_02970 | Q59659 | Positive | 3107341 - 3107724 | 13936.2 |
| succinate dehydrogenase, hydrophobic membrane anchor protein | PH7735_02971 | Q59660 | Positive | 3107738 - 3108109 | 13538.8 |
| succinate dehydrogenase flavoprotein subunit | PH7735_02972 | Q59661 | Positive | 3108125 - 3109930 | 65004.7 |
| hypothetical protein | PH7735_02973 | Not Available | Positive | 3109946 - 3110782 | 31319.2 |
| succinate dehydrogenase iron-sulfur subunit | PH7735_02974 | Q59662 | Positive | 3110834 - 3111613 | 29528.8 |
| hemolysin, chromosomal | PH7735_02975 | Not Available | Positive | 3111635 - 3113455 | 63447.2 |
| hypothetical protein | PH7735_02976 | Not Available | Positive | 3113610 - 3113768 | 5766.65 |
| urea carboxylase-associated protein 1 | PH7735_02977 | Not Available | Positive | 3113925 - 3114779 | 31058.3 |
| serine hydroxymethyltransferase 2 | PH7735_02978 | Q4J937 | Negative | 3114851 - 3116173 | 46424.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
