Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell division abc transporter subunit ftsx | PH7735_02949 | Not Available | Positive | 3087256 - 3088161 | 31554.6 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | PH7735_02950 | Not Available | Positive | 3088161 - 3088901 | 28210.8 |
| pyridoxamine 5'-phosphate oxidase, fmn-binding family | PH7735_02951 | Not Available | Positive | 3088870 - 3089493 | 22912.3 |
| dihydrolipoyl dehydrogenase 3 | PH7735_02952 | P95596 | Negative | 3089816 - 3091213 | 48654.8 |
| hypothetical protein | PH7735_02953 | Not Available | Negative | 3091277 - 3091546 | 9923.84 |
| dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex | PH7735_02954 | Q8GCY1 | Negative | 3091713 - 3093203 | 51597.9 |
| 2-oxoglutarate dehydrogenase e1 component | PH7735_02955 | A5VSQ0 | Negative | 3093207 - 3096167 | 110431.0 |
| hypothetical protein | PH7735_02956 | Not Available | Negative | 3096164 - 3096592 | 14948.3 |
| succinyl-coa ligase | PH7735_02957 | Q1RH56 | Negative | 3096714 - 3097595 | 30171.3 |
| succinyl-coa ligase | PH7735_02958 | Q28U74 | Negative | 3097600 - 3098796 | 42471.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
