Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclic di-gmp phosphodiesterase yfgf | PH7735_02929 | Q04855 | Negative | 3072379 - 3073221 | 31461.7 |
| dna-3-methyladenine glycosylase 1 | PH7735_02930 | P05100 | Positive | 3073322 - 3073909 | 22472.7 |
| fatty acid hydroxylase superfamily protein | PH7735_02931 | Not Available | Negative | 3073911 - 3074840 | 35848.4 |
| hypothetical protein | PH7735_02932 | Not Available | Negative | 3074837 - 3075226 | 14372.3 |
| hypothetical protein | PH7735_02933 | Not Available | Positive | 3075405 - 3076427 | 37446.1 |
| cytochrome c biogenesis protein tlpa | PH7735_02934 | P43221 | Negative | 3076431 - 3077030 | 21502.8 |
| argininosuccinate lyase 1 | PH7735_02935 | Q5LXC0 | Positive | 3077058 - 3078449 | 50113.7 |
| hypothetical protein | PH7735_02936 | Not Available | Positive | 3078446 - 3078637 | 5914.98 |
| hypothetical protein | PH7735_02937 | Not Available | Positive | 3078686 - 3078823 | 4515.52 |
| hypothetical protein | PH7735_02938 | Not Available | Positive | 3078823 - 3078969 | 5307.51 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
