Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-coa dehydrogenase | PH7735_02899 | Q5LLW7 | Positive | 3044073 - 3045791 | 61299.9 |
| hydroxyacylglutathione hydrolase | PH7735_02900 | Not Available | Positive | 3045788 - 3046834 | 38918.3 |
| hypothetical protein | PH7735_02901 | Not Available | Positive | 3046847 - 3047305 | 16646.7 |
| cytochrome p450-pinf2, plant-inducible | PH7735_02902 | P24467 | Negative | 3047297 - 3048469 | 43541.2 |
| transcriptional regulator slya | PH7735_02903 | Not Available | Positive | 3048571 - 3049101 | 19678.2 |
| cytochrome c oxidase subunit 4 | PH7735_02904 | Not Available | Positive | 3049214 - 3049348 | 4651.63 |
| hypothetical protein | PH7735_02905 | Not Available | Positive | 3049374 - 3050003 | 22643.9 |
| putative membrane protein | PH7735_02906 | Not Available | Negative | 3050007 - 3050333 | 11586.7 |
| inner membrane protein ygaz | PH7735_02907 | Not Available | Negative | 3050330 - 3051055 | 25931.1 |
| formate dehydrogenase accessory protein | PH7735_02908 | Q927Q9 | Positive | 3051114 - 3051995 | 32046.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
