Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate carbamoyltransferase | PH7735_02889 | Q5LX75 | Negative | 3032763 - 3033722 | 35314.8 |
| uracil-dna glycosylase, family 4 | PH7735_02890 | Q5SKC5 | Positive | 3033903 - 3034682 | 28873.0 |
| phosphodiesterase, family | PH7735_02891 | Not Available | Positive | 3034679 - 3035278 | 20891.8 |
| homoserine/homoserine lactone efflux protein | PH7735_02892 | Q9KVK7 | Positive | 3035275 - 3035892 | 21157.7 |
| molybdenum cofactor biosynthesis protein b | PH7735_02893 | P0AF00 | Positive | 3035889 - 3036434 | 20242.1 |
| acriflavine resistance protein a precursor | PH7735_02894 | Not Available | Positive | 3036527 - 3037984 | 53101.5 |
| efflux pump membrane transporter bepe | PH7735_02895 | Not Available | Positive | 3037991 - 3041380 | 121712.0 |
| putative protein predicted to be involved in c-type cytochrome biogenesis | PH7735_02896 | Not Available | Negative | 3041372 - 3042178 | 29414.3 |
| hypothetical protein | PH7735_02897 | Q163D2 | Positive | 3042353 - 3042931 | 20025.8 |
| t(6)a37 threonylcarbamoyladenosine biosynthesis protein rimn | PH7735_02898 | P39153 | Negative | 3043009 - 3043950 | 32675.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
