Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp12 chaperone protein | PH7735_02819 | Q91YY4 | Positive | 2972366 - 2973076 | 26697.7 |
| general l-amino acid-binding periplasmic protein aapj precursor | PH7735_02820 | Q52663 | Positive | 2973279 - 2974295 | 35408.6 |
| putative glutamine abc transporter permease protein glnm | PH7735_02821 | Q52664 | Positive | 2974422 - 2975636 | 43818.7 |
| inner membrane amino-acid abc transporter permease protein yhdy | PH7735_02822 | Q52665 | Positive | 2975640 - 2976938 | 47308.0 |
| glutamine transport atp-binding protein glnq | PH7735_02823 | Q52666 | Positive | 2976952 - 2977716 | 28707.9 |
| phosphohistidine phosphatase sixa | PH7735_02824 | Not Available | Negative | 2977781 - 2978272 | 18228.0 |
| hypothetical protein | PH7735_02825 | Not Available | Negative | 2978262 - 2978921 | 23941.3 |
| fatty acid hydroxylase superfamily protein | PH7735_02826 | Not Available | Negative | 2978918 - 2979712 | 30172.2 |
| acetylglutamate kinase | PH7735_02827 | Q5LW17 | Negative | 2979777 - 2980640 | 30377.8 |
| cyclic-di-gmp-binding biofilm dispersal mediator protein | PH7735_02828 | P05406 | Positive | 2980755 - 2981486 | 25743.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
