Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| coproporphyrinogen-iii oxidase, aerobic | PH7735_02789 | Q9AAT8 | Positive | 2951500 - 2952393 | 33211.9 |
| hypothetical protein | PH7735_02790 | Not Available | Negative | 2952448 - 2953011 | 20684.6 |
| porphobilinogen deaminase | PH7735_02791 | A1B853 | Negative | 2953181 - 2954140 | 34059.8 |
| uroporphyrinogen decarboxylase | PH7735_02792 | Q5LMB5 | Positive | 2954342 - 2955376 | 37402.7 |
| 50s ribosomal protein l29 | PH7735_02793 | Q16AD6 | Positive | 2955679 - 2955879 | 7533.94 |
| 30s ribosomal protein s17 | PH7735_02794 | Q1GK20 | Positive | 2955893 - 2956123 | 8769.62 |
| hypothetical protein | PH7735_02795 | Q5LW48 | Positive | 2956221 - 2956589 | 13414.5 |
| hypothetical protein | PH7735_02796 | Q5LW47 | Positive | 2956591 - 2956902 | 10915.3 |
| hypothetical protein | PH7735_02797 | Q1GK17 | Positive | 2956895 - 2957455 | 20703.1 |
| hypothetical protein | PH7735_02798 | Q1GK16 | Positive | 2957473 - 2957778 | 11795.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
