Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase accessory protein ccog | PH7735_02779 | P54932 | Positive | 2941627 - 2943057 | 54309.0 |
| putative integral membrane protein linked to a cation pump | PH7735_02780 | Not Available | Positive | 2943054 - 2943515 | 16792.2 |
| putative copper-importing p-type atpase a | PH7735_02781 | O33533 | Positive | 2943520 - 2945706 | 76236.3 |
| cytochrome oxidase maturation protein, cbb3-type | PH7735_02782 | Not Available | Positive | 2945716 - 2945874 | 5893.97 |
| fumarylpyruvate hydrolase | PH7735_02783 | Q86I22 | Negative | 2945941 - 2946630 | 24292.1 |
| d-alanyl-d-alanine carboxypeptidase dacf precursor | PH7735_02784 | Not Available | Negative | 2946673 - 2948280 | 58247.9 |
| dump phosphatase | PH7735_02785 | Not Available | Negative | 2948367 - 2949068 | 26274.1 |
| atp-dependent clp protease adapter protein clps | PH7735_02786 | Q1GDK0 | Positive | 2949163 - 2949501 | 12837.6 |
| ribosomal rna large subunit methyltransferase g | PH7735_02787 | A1U204 | Positive | 2949532 - 2950515 | 35687.5 |
| 3-oxoacyl-[acyl-carrier-protein] reductase fabg | PH7735_02788 | P0A2D2 | Positive | 2950558 - 2951358 | 28645.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
