Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-keto-4-pentenoate hydratase | PH7735_00239 | P42270 | Negative | 252850 - 253650 | 28230.6 |
| ureidoglycolate lyase | PH7735_00240 | O06724 | Negative | 253647 - 254498 | 31195.9 |
| manganese-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase | PH7735_00241 | P31003 | Negative | 254539 - 255519 | 37274.2 |
| 3,4-dihydroxyphenylacetate 2,3-dioxygenase | PH7735_00242 | Q05353 | Negative | 255633 - 256487 | 31338.0 |
| 2-aminomuconic 6-semialdehyde dehydrogenase | PH7735_00243 | P42269 | Negative | 256567 - 258075 | 54580.9 |
| 5-carboxymethyl-2-hydroxymuconate delta-isomerase | PH7735_00244 | Not Available | Negative | 258077 - 258460 | 13966.8 |
| cyclolysin | PH7735_00245 | Not Available | Negative | 258590 - 263164 | 154737.0 |
| hypothetical protein | PH7735_00246 | Not Available | Negative | 263416 - 263676 | 9690.85 |
| decaheme c-type cytochrome, dmse family | PH7735_00247 | Not Available | Negative | 263819 - 265750 | 70582.4 |
| virulence-regulating protein virs | PH7735_00248 | Not Available | Negative | 265866 - 266849 | 36873.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
