Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutathione import atp-binding protein gsia | PH7735_02769 | Not Available | Positive | 2930892 - 2932475 | 57463.3 |
| oxygen-independent coproporphyrinogen-iii oxidase | PH7735_02770 | Q51676 | Negative | 2932532 - 2933887 | 49754.2 |
| nitrogen fixation regulation protein fixk | PH7735_02771 | P51007 | Positive | 2933947 - 2934699 | 27910.9 |
| universal stress protein family protein | PH7735_02772 | Not Available | Negative | 2934797 - 2935636 | 30041.2 |
| hypothetical protein | PH7735_02773 | P98059 | Positive | 2935837 - 2937435 | 59470.2 |
| cbb3-type cytochrome c oxidase subunit ii | PH7735_02774 | Not Available | Positive | 2937450 - 2938178 | 27303.5 |
| cbb3-type cytochrome oxidase, subunit 3 | PH7735_02775 | Not Available | Positive | 2938190 - 2938360 | 6608.85 |
| cytochrome c oxidase subunit iii | PH7735_02776 | Q3J015 | Positive | 2938373 - 2939257 | 31860.9 |
| gcv operon activator | PH7735_02777 | P42507 | Positive | 2939643 - 2940524 | 32151.5 |
| putative integral membrane protein | PH7735_02778 | Not Available | Negative | 2940521 - 2941312 | 29697.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
