Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homoprotocatechuate degradation operon regulator, hpar | PH7735_02719 | Not Available | Positive | 2888147 - 2888584 | 16858.2 |
| adenylate cyclase 1 | PH7735_02720 | Not Available | Positive | 2888594 - 2889823 | 44501.2 |
| l-2,4-diaminobutyrate decarboxylase | PH7735_02721 | I0DFJ0 | Positive | 2889894 - 2891363 | 52917.6 |
| carboxylate/amino acid/amine transporter | PH7735_02722 | Not Available | Positive | 2891360 - 2892238 | 30283.2 |
| para-like protein | PH7735_02723 | Not Available | Negative | 2892250 - 2893059 | 29813.3 |
| ribosomal large subunit pseudouridine synthase e | PH7735_02724 | Q9HX48 | Negative | 2893189 - 2893881 | 25522.8 |
| cystathionine gamma-synthase | PH7735_02725 | P66876 | Positive | 2893919 - 2895061 | 40729.8 |
| o-acetyltransferase oata | PH7735_02726 | Q2FV54 | Negative | 2895065 - 2896135 | 39991.6 |
| 50s ribosomal protein l31 | PH7735_02727 | Q1GDB7 | Negative | 2896295 - 2896516 | 8145.77 |
| 50s ribosomal protein l19 | PH7735_02728 | Q5LNE8 | Negative | 2896528 - 2896902 | 13810.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
