Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1,2-phenylacetyl-coa monooxygenase, subunit b | PH7735_02709 | P76078 | Negative | 2878298 - 2878582 | 10774.8 |
| 1,2-phenylacetyl-coa epoxidase, subunit a | PH7735_02710 | P76077 | Negative | 2878604 - 2879596 | 37784.7 |
| 3-oxoadipyl-coa/3-oxo-5,6-dehydrosuberyl-coa thiolase | PH7735_02711 | Q9I6R0 | Negative | 2879612 - 2880814 | 41069.0 |
| maleylpyruvate isomerase | PH7735_02712 | Q9X4F7 | Negative | 2881086 - 2881724 | 23145.7 |
| putative ring-cleaving dioxygenase mhqa | PH7735_02713 | Not Available | Negative | 2881801 - 2882346 | 21046.0 |
| hypothetical protein | PH7735_02714 | Not Available | Negative | 2882353 - 2882553 | 6968.18 |
| 3-(3-hydroxy-phenyl)propionate/3- hydroxycinnamic acid hydroxylase | PH7735_02715 | A0R1T4 | Negative | 2882559 - 2884181 | 60537.6 |
| beta-lactamase precursor | PH7735_02716 | Not Available | Negative | 2884321 - 2885271 | 34720.9 |
| fumarylacetoacetase | PH7735_02717 | P25093 | Negative | 2885352 - 2886626 | 45713.0 |
| homogentisate 1,2-dioxygenase | PH7735_02718 | A6UDD3 | Negative | 2886698 - 2888059 | 50674.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
