Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylacetate-coenzyme a ligase | PH7735_02699 | Q9L9C1 | Positive | 2870310 - 2871620 | 48178.7 |
| nicotinate degradation protein s | PH7735_02700 | Not Available | Positive | 2871624 - 2872220 | 22404.7 |
| leucine dehydrogenase | PH7735_02701 | P0A393 | Negative | 2872295 - 2873356 | 37005.3 |
| leucine-responsive regulatory protein | PH7735_02702 | P42179 | Positive | 2873492 - 2873950 | 17140.1 |
| putative membrane protein | PH7735_02703 | P0DUT9 | Negative | 2873947 - 2874393 | 16853.9 |
| multiple antibiotic resistance protein marr | PH7735_02704 | Not Available | Positive | 2874472 - 2874972 | 18470.5 |
| 1,2-phenylacetyl-coa epoxidase, subunit a | PH7735_02705 | Not Available | Negative | 2875046 - 2875804 | 27251.6 |
| 1,2-phenylacetyl-coa epoxidase, subunit e | PH7735_02706 | P76081 | Negative | 2875818 - 2876894 | 38710.9 |
| 1,2-phenylacetyl-coa monooxygenase, subunit d | PH7735_02707 | P76080 | Negative | 2877021 - 2877482 | 17166.6 |
| 1,2-phenylacetyl-coa monooxygenase, subunit c | PH7735_02708 | P76079 | Negative | 2877534 - 2878298 | 28025.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
