Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-2,4-diaminobutyrate decarboxylase | PH7735_02689 | P80041 | Negative | 2858895 - 2860307 | 52421.4 |
| staphylococcal accessory regulator z | PH7735_02690 | P0DPR8 | Positive | 2860484 - 2860849 | 14011.9 |
| transcriptional repressor paax | PH7735_02691 | Not Available | Negative | 2860860 - 2861705 | 31433.8 |
| bifunctional protein paaz | PH7735_02692 | P77455 | Negative | 2861749 - 2863872 | 76158.9 |
| neu5ac permease | PH7735_02693 | Not Available | Negative | 2863912 - 2865264 | 47659.1 |
| trap-type c4-dicarboxylate transport system, small permease component | PH7735_02694 | Not Available | Negative | 2865261 - 2865767 | 18776.6 |
| neu5ac-binding protein | PH7735_02695 | Not Available | Negative | 2865846 - 2866868 | 35905.8 |
| fatty acid oxidation complex subunit alpha | PH7735_02696 | Q6NYL3 | Negative | 2866939 - 2868978 | 73359.0 |
| 1,2-epoxyphenylacetyl-coa isomerase | PH7735_02697 | Not Available | Positive | 2869082 - 2869867 | 27867.3 |
| acyl-coenzyme a thioesterase paai | PH7735_02698 | P76084 | Positive | 2869864 - 2870295 | 15186.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
