Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_02679 | Not Available | Negative | 2848754 - 2848888 | 5153.19 |
| aspartate-semialdehyde dehydrogenase 2 | PH7735_02680 | O67716 | Negative | 2849229 - 2850251 | 37477.7 |
| 2-deoxystreptamine glucosyltransferase | PH7735_02681 | Q9R9N2 | Negative | 2850376 - 2851389 | 36473.9 |
| mfs transport protein araj | PH7735_02682 | Not Available | Negative | 2851397 - 2852569 | 41268.6 |
| hypothetical protein | PH7735_02683 | Not Available | Positive | 2852716 - 2853969 | 45313.5 |
| leucine/isoleucine/valine transporter permease subunit | PH7735_02684 | Q58666 | Negative | 2853865 - 2854923 | 37841.9 |
| liv-i protein h | PH7735_02685 | Not Available | Negative | 2854925 - 2855956 | 36256.4 |
| liv-i protein f | PH7735_02686 | Not Available | Negative | 2856018 - 2856743 | 26176.9 |
| lipopolysaccharide export system atp-binding protein lptb | PH7735_02687 | Not Available | Negative | 2856736 - 2857536 | 29147.2 |
| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor | PH7735_02688 | Not Available | Negative | 2857608 - 2858783 | 42400.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
