Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tripartite tricarboxylate transporter tctb family protein | PH7735_00229 | Not Available | Negative | 243635 - 244165 | 20306.7 |
| tripartite tricarboxylate transporter family receptor | PH7735_00230 | P0A177 | Negative | 244230 - 245171 | 32427.6 |
| acetate operon repressor | PH7735_00231 | Not Available | Positive | 245341 - 246138 | 28808.4 |
| taurine--pyruvate aminotransferase | PH7735_00232 | E1V7V7 | Positive | 246166 - 247521 | 48320.6 |
| ferredoxin vi | PH7735_00233 | P37098 | Negative | 247595 - 247909 | 11028.0 |
| gamma-glutamylputrescine synthetase puua | PH7735_00234 | Q9HNI2 | Negative | 247988 - 249277 | 47293.2 |
| putative cytochrome p450 124 | PH7735_00235 | P0A517 | Negative | 249289 - 250551 | 48118.0 |
| gmp synthase | PH7735_00236 | A6LD04 | Positive | 250614 - 251354 | 27084.7 |
| putative hth-type transcriptional regulator ydfh | PH7735_00237 | P70790 | Negative | 251375 - 252025 | 23649.6 |
| 2-keto-3-deoxy-l-rhamnonate aldolase | PH7735_00238 | B7MG11 | Negative | 252065 - 252838 | 27035.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
