Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 56kda selenium binding protein (sbp56) | PH7735_02669 | Q569D5 | Negative | 2841303 - 2842703 | 52232.3 |
| kip operon repressor protein | PH7735_02670 | Not Available | Negative | 2842784 - 2843542 | 27476.4 |
| hypothetical protein | PH7735_02671 | Not Available | Negative | 2843723 - 2843881 | 5958.14 |
| hypothetical protein | PH7735_02672 | Not Available | Positive | 2843920 - 2844306 | 14551.2 |
| peptidase inhibitor i78 family protein | PH7735_02673 | Not Available | Positive | 2844303 - 2844575 | 9890.99 |
| hypothetical protein | PH7735_02674 | Not Available | Positive | 2844789 - 2845136 | 13272.4 |
| dipeptidyl-peptidase 6 | PH7735_02675 | Not Available | Negative | 2845133 - 2845996 | 31395.0 |
| cytosol aminopeptidase | PH7735_02676 | C6E543 | Negative | 2845996 - 2847381 | 48555.3 |
| hypothetical protein | PH7735_02677 | Not Available | Negative | 2847467 - 2847847 | 14189.2 |
| carbonic anhydrase 1 | PH7735_02678 | P46513 | Positive | 2847998 - 2848648 | 23832.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
