Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_02649 | Not Available | Negative | 2820394 - 2820564 | 6610.9 |
| arylsulfatase | PH7735_02650 | P31447 | Negative | 2820577 - 2822091 | 56155.9 |
| tripartite tricarboxylate transporter tcta family protein | PH7735_02651 | Not Available | Negative | 2822088 - 2823686 | 55719.8 |
| hypothetical protein | PH7735_02652 | Not Available | Negative | 2823686 - 2824228 | 19818.8 |
| tripartite tricarboxylate transporter family receptor | PH7735_02653 | Not Available | Negative | 2824298 - 2825245 | 31710.1 |
| transcriptional regulator slya | PH7735_02654 | Not Available | Positive | 2825371 - 2825859 | 18274.1 |
| choline-sulfatase | PH7735_02655 | O69787 | Positive | 2825863 - 2827308 | 53340.6 |
| putative fad-linked oxidoreductase | PH7735_02656 | Not Available | Positive | 2827344 - 2828729 | 49441.2 |
| membrane protein abrb duplication | PH7735_02657 | Not Available | Positive | 2828793 - 2829866 | 37273.9 |
| serine/threonine-protein kinase pkn1 | PH7735_02658 | D1A7C3 | Positive | 2829876 - 2830823 | 34976.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
