Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-oxoacyl-[acyl-carrier-protein] reductase fabg | PH7735_02639 | Q9X248 | Negative | 2809475 - 2810179 | 24502.2 |
| gcv operon activator | PH7735_02640 | P0A9F8 | Positive | 2810277 - 2811149 | 31109.2 |
| mobile mystery protein a | PH7735_02641 | Not Available | Negative | 2811201 - 2811647 | 16881.1 |
| inner membrane protein yqij | PH7735_02642 | Not Available | Positive | 2811801 - 2812481 | 24028.2 |
| inner membrane protein yqik | PH7735_02643 | P77306 | Positive | 2812531 - 2814207 | 60249.8 |
| hth-type transcriptional regulator yess | PH7735_02644 | Not Available | Negative | 2814367 - 2815350 | 35842.3 |
| nad(p)h azoreductase | PH7735_02645 | Q4WZ69 | Positive | 2815500 - 2816327 | 28821.2 |
| hypothetical protein | PH7735_02646 | Not Available | Positive | 2816356 - 2816769 | 13819.2 |
| putative n-methylproline demethylase | PH7735_02647 | O87278 | Negative | 2816859 - 2818892 | 73262.8 |
| bifunctional homocysteine s-methyltransferase/5,10-methylenetetrahydrofolate reductase protein | PH7735_02648 | Not Available | Positive | 2819165 - 2820100 | 33932.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
