Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| preprotein translocase subunit secf | PH7735_02589 | O33568 | Positive | 2757436 - 2758404 | 35289.3 |
| sulfite exporter taue/safe | PH7735_02590 | Not Available | Positive | 2758397 - 2759164 | 26739.8 |
| hypothetical protein | PH7735_02591 | P29962 | Positive | 2759161 - 2759514 | 12510.2 |
| cytochrome c biogenesis atp-binding export protein ccma | PH7735_02592 | Q5LR15 | Positive | 2759698 - 2760327 | 21773.1 |
| cytochrome c-type biogenesis protein ccmb | PH7735_02593 | P29960 | Positive | 2760324 - 2760980 | 22596.0 |
| cytochrome c-type biogenesis protein ccmc | PH7735_02594 | P52220 | Positive | 2761089 - 2761820 | 27358.9 |
| heme exporter protein ccmd | PH7735_02595 | Not Available | Positive | 2761817 - 2761969 | 5563.98 |
| cytochrome c biogenesis protein cycy | PH7735_02596 | P36893 | Positive | 2761962 - 2762504 | 19630.8 |
| aconitate hydratase 1 | PH7735_02597 | Q9I3F5 | Negative | 2762593 - 2765280 | 96553.8 |
| aconitate hydratase 2 | PH7735_02598 | Q9I2V5 | Positive | 2765611 - 2768400 | 99948.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
