Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| toluene efflux pump membrane transporter ttgh | PH7735_02579 | O31100 | Negative | 2743210 - 2747049 | 139427.0 |
| multidrug transporter mdta | PH7735_02580 | Not Available | Negative | 2747046 - 2748275 | 43517.6 |
| hypothetical protein | PH7735_02581 | Not Available | Positive | 2748485 - 2749165 | 23759.2 |
| outer membrane protein assembly factor bamb precursor | PH7735_02582 | F5ZAY7 | Positive | 2749210 - 2750514 | 45748.1 |
| gtp-binding protein enga | PH7735_02583 | Q1GHZ2 | Positive | 2750563 - 2752020 | 53984.2 |
| fatty acid desaturase | PH7735_02584 | O34653 | Positive | 2752164 - 2753150 | 38311.0 |
| serine--trna ligase | PH7735_02585 | Q5LR07 | Negative | 2753225 - 2754517 | 46933.4 |
| trypsin | PH7735_02586 | Not Available | Negative | 2754600 - 2755253 | 22989.8 |
| preprotein translocase subunit yajc | PH7735_02587 | Q2YNM1 | Positive | 2755447 - 2755737 | 10504.0 |
| preprotein translocase subunit secd | PH7735_02588 | O33517 | Positive | 2755771 - 2757432 | 59347.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
