Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sarcosine oxidase, gamma subunit family | PH7735_02569 | Not Available | Positive | 2734223 - 2734792 | 19724.3 |
| hypothetical protein | PH7735_02570 | Not Available | Positive | 2734969 - 2735439 | 17170.0 |
| hypothetical protein | PH7735_02571 | Not Available | Positive | 2735648 - 2736070 | 15891.1 |
| hypothetical protein | PH7735_02572 | Not Available | Positive | 2736242 - 2736619 | 13789.2 |
| superoxide dismutase | PH7735_02573 | O30970 | Positive | 2736717 - 2737316 | 22056.7 |
| 4-chlorobenzoyl coenzyme a dehalogenase-2 | PH7735_02574 | Q3MIE0 | Positive | 2737427 - 2738209 | 28055.8 |
| putative chloramphenical resistance permease rard | PH7735_02575 | Q8Z3B1 | Positive | 2738273 - 2739163 | 31959.2 |
| log family protein orf6 in fasciation locus | PH7735_02576 | P48636 | Negative | 2739133 - 2739684 | 19920.9 |
| lysm domain/bon superfamily protein | PH7735_02577 | Not Available | Positive | 2739823 - 2741223 | 49123.0 |
| putative multidrug export atp-binding/permease protein | PH7735_02578 | Q2G506 | Positive | 2741304 - 2743124 | 67304.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
