Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_02559 | Not Available | Negative | 2724597 - 2724815 | 8059.75 |
| putative trna-dihydrouridine synthase | PH7735_02560 | Q8EAJ0 | Positive | 2724858 - 2725817 | 35224.3 |
| sulfite exporter taue/safe | PH7735_02561 | P44070 | Positive | 2725819 - 2726643 | 28526.3 |
| hypothetical protein | PH7735_02562 | Not Available | Positive | 2726637 - 2727419 | 28611.0 |
| putative fe-s protein | PH7735_02563 | Not Available | Negative | 2727423 - 2727668 | 9251.25 |
| putative holliday junction resolvase | PH7735_02564 | Q1GI16 | Negative | 2727668 - 2728150 | 17594.3 |
| cytochrome c-type biogenesis protein ccmi | PH7735_02565 | Not Available | Negative | 2728147 - 2729385 | 44757.1 |
| sarcosine oxidase subunit beta | PH7735_02566 | Q52671 | Positive | 2729565 - 2730812 | 44857.8 |
| sarcosine oxidase, delta subunit family | PH7735_02567 | Not Available | Positive | 2730828 - 2731157 | 12578.7 |
| aminomethyltransferase | PH7735_02568 | Not Available | Positive | 2731219 - 2734230 | 108912.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
