Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| vwa domain containing coxe-like protein | PH7735_02529 | Not Available | Negative | 2690811 - 2691992 | 42979.7 |
| gas vesicle protein gvpn | PH7735_02530 | Not Available | Negative | 2691989 - 2692864 | 31959.2 |
| carbon monoxide dehydrogenase large chain | PH7735_02531 | P19919 | Negative | 2692916 - 2695345 | 88135.8 |
| carbon monoxide dehydrogenase small chain | PH7735_02532 | Not Available | Negative | 2695342 - 2695836 | 17868.4 |
| carbon monoxide dehydrogenase medium chain | PH7735_02533 | Not Available | Negative | 2695851 - 2696705 | 29929.7 |
| co-responsive transcriptional regulator rcom | PH7735_02534 | Not Available | Negative | 2696841 - 2697965 | 40210.7 |
| glucosyl-3-phosphoglycerate/mannosyl-3- phosphoglycerate phosphatase | PH7735_02535 | C0QRP9 | Positive | 2698451 - 2699236 | 28075.4 |
| glucosyl-3-phosphoglycerate synthase | PH7735_02536 | C0QRQ2 | Positive | 2699249 - 2700466 | 45694.6 |
| sucrose phosphorylase | PH7735_02537 | D7BAR0 | Negative | 2700463 - 2702211 | 66354.6 |
| morphology and auto-aggregation control protein | PH7735_02538 | P0ACQ6 | Negative | 2702457 - 2703362 | 32693.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
