Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetophenone carboxylase gamma subunit | PH7735_02519 | Q58374 | Positive | 2680945 - 2683023 | 74527.9 |
| acetophenone carboxylase delta subunit | PH7735_02520 | P28273 | Positive | 2683029 - 2684738 | 60971.3 |
| sarcosine oxidase subunit beta | PH7735_02521 | Q6DCP1 | Positive | 2684735 - 2685946 | 44839.9 |
| 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase | PH7735_02522 | B5FR34 | Positive | 2685946 - 2686740 | 27915.3 |
| aspartate aminotransferase | PH7735_02523 | P58350 | Positive | 2686715 - 2687932 | 42761.2 |
| hopanoid-associated sugar epimerase | PH7735_02524 | Q888H1 | Positive | 2687929 - 2688768 | 30323.9 |
| hypothetical protein | PH7735_02525 | Not Available | Negative | 2688876 - 2689328 | 15686.6 |
| hypothetical protein | PH7735_02526 | Not Available | Negative | 2689342 - 2689434 | 3603.69 |
| bifunctional n-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase | PH7735_02527 | Not Available | Negative | 2689431 - 2690036 | 21521.8 |
| xanthine dehydrogenase accessory protein xdhc | PH7735_02528 | Q46808 | Negative | 2690029 - 2690814 | 27127.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
