Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitrile hydratase accessory protein | PH7735_02489 | Not Available | Positive | 2651021 - 2651341 | 11652.6 |
| hypothetical protein | PH7735_02490 | Not Available | Negative | 2651346 - 2651741 | 14967.6 |
| adenylosuccinate synthetase | PH7735_02491 | A8LIN4 | Positive | 2651882 - 2653177 | 46525.6 |
| hypothetical protein | PH7735_02492 | Not Available | Positive | 2653191 - 2653427 | 8887.15 |
| hypothetical protein | PH7735_02493 | Not Available | Negative | 2653551 - 2655800 | 81086.5 |
| thiamine pyrophosphokinase | PH7735_02494 | Not Available | Positive | 2655903 - 2656622 | 25599.0 |
| carboxylate/amino acid/amine transporter | PH7735_02495 | Not Available | Negative | 2656579 - 2657487 | 32807.0 |
| acetyl-coenzyme a synthetase | PH7735_02496 | O68040 | Negative | 2657631 - 2659586 | 71903.8 |
| liv-i protein f | PH7735_02497 | P22731 | Negative | 2659668 - 2660423 | 27698.3 |
| lipopolysaccharide export system atp-binding protein lptb | PH7735_02498 | P21629 | Negative | 2660436 - 2661191 | 27525.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
