Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gamma-glutamylputrescine synthetase puua | PH7735_02469 | Not Available | Negative | 2635705 - 2637081 | 50951.2 |
| gmp synthase | PH7735_02470 | F4INN2 | Negative | 2637081 - 2637761 | 25193.6 |
| gamma-glutamylputrescine synthetase puua | PH7735_02471 | P78061 | Negative | 2637893 - 2639209 | 47729.2 |
| hypothetical protein | PH7735_02472 | Not Available | Positive | 2639450 - 2639857 | 13827.6 |
| histidine transport system permease protein hism | PH7735_02473 | P45089 | Negative | 2639873 - 2640679 | 30629.7 |
| arginine abc transporter permease protein artq | PH7735_02474 | P0AE35 | Negative | 2640676 - 2641560 | 33133.7 |
| lysine-arginine-ornithine-binding periplasmic protein precursor | PH7735_02475 | P72298 | Negative | 2641617 - 2642336 | 25566.2 |
| octopine permease atp-binding protein p | PH7735_02476 | P07109 | Negative | 2642362 - 2643138 | 28550.3 |
| hypothetical protein | PH7735_02477 | Not Available | Positive | 2643186 - 2643401 | 7853.61 |
| phosphate/phosphite/phosphonate abc transporters, periplasmic binding protein | PH7735_02478 | Not Available | Negative | 2643419 - 2644156 | 27017.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
