Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetoin dehydrogenase e2 subunit dihydrolipoyllysine-residue acetyltransferase | PH7735_02459 | Not Available | Positive | 2626084 - 2627067 | 35190.1 |
| putative lactoylglutathione lyase | PH7735_02460 | Not Available | Positive | 2627081 - 2627515 | 15655.5 |
| carboxylesterase ybfk | PH7735_02461 | Not Available | Positive | 2627604 - 2628314 | 25777.9 |
| polyhydroxyalkanoate depolymerase, intracellular | PH7735_02462 | Not Available | Negative | 2628432 - 2629709 | 47528.9 |
| poly-beta-hydroxybutyrate polymerase | PH7735_02463 | Q9ZHI2 | Positive | 2629813 - 2631606 | 67836.2 |
| hypothetical protein | PH7735_02464 | Not Available | Positive | 2631738 - 2632181 | 15558.5 |
| polyhydroxyalkanoate synthesis repressor phar | PH7735_02465 | Not Available | Positive | 2632333 - 2632884 | 20271.0 |
| udp-4-amino-4, 6-dideoxy-n-acetyl-alpha-d-glucosamine transaminase | PH7735_02466 | P39623 | Negative | 2632942 - 2634156 | 44102.7 |
| hypothetical protein | PH7735_02467 | Not Available | Negative | 2634131 - 2634271 | 5033.24 |
| gamma-glutamylputrescine oxidoreductase | PH7735_02468 | Not Available | Negative | 2634311 - 2635618 | 47355.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
