Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate aminotransferase | PH7735_02439 | A3PMF8 | Negative | 2611305 - 2612507 | 42752.0 |
| transcriptional repressor dica | PH7735_02440 | Not Available | Positive | 2612593 - 2613018 | 16043.8 |
| flavinator of succinate dehydrogenase | PH7735_02441 | Not Available | Positive | 2613011 - 2613271 | 10438.4 |
| marr family protein | PH7735_02442 | P96440 | Positive | 2613365 - 2613862 | 18976.9 |
| hypothetical protein | PH7735_02443 | Not Available | Negative | 2613924 - 2614622 | 25127.9 |
| lactoylglutathione lyase | PH7735_02444 | P0A1Q3 | Negative | 2614625 - 2615053 | 16365.2 |
| hypothetical protein | PH7735_02445 | Not Available | Negative | 2615124 - 2616527 | 50659.0 |
| hypothetical protein | PH7735_02446 | Not Available | Negative | 2616490 - 2617392 | 31279.8 |
| thymidylate synthase thyx | PH7735_02447 | Q5LTY7 | Positive | 2617593 - 2618495 | 34421.1 |
| hypothetical protein | PH7735_02448 | Not Available | Positive | 2618613 - 2618900 | 9666.56 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
