Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1-deoxy-d-xylulose 5-phosphate reductoisomerase | PH7735_02419 | Q5LSU9 | Positive | 2592608 - 2593780 | 42020.3 |
| regulator of sigma e protease | PH7735_02420 | Q8UFL7 | Positive | 2593789 - 2595135 | 47616.4 |
| hypothetical protein | PH7735_02421 | Not Available | Positive | 2595246 - 2595380 | 4836.08 |
| outer membrane protein assembly factor bama precursor | PH7735_02422 | C6V5K2 | Positive | 2595557 - 2597908 | 87741.2 |
| outer membrane protein | PH7735_02423 | Not Available | Positive | 2597915 - 2598472 | 20392.3 |
| 3-hydroxyacyl-[acyl-carrier-protein] dehydratase fabz | PH7735_02424 | Q166E7 | Positive | 2598545 - 2599009 | 17134.2 |
| acyl-[acyl-carrier-protein]--udp-n- acetylglucosamine o-acyltransferase | PH7735_02425 | A1B8X9 | Positive | 2599016 - 2599813 | 27918.7 |
| hypothetical protein | PH7735_02426 | Not Available | Positive | 2599818 - 2600621 | 27719.1 |
| lipid-a-disaccharide synthase | PH7735_02427 | Q5LSU1 | Positive | 2600621 - 2601778 | 41204.4 |
| hypothetical protein | PH7735_02428 | Not Available | Positive | 2601778 - 2602362 | 19969.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
