Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exodeoxyribonuclease v alpha chain | PH7735_02399 | O34481 | Negative | 2570789 - 2572969 | 79715.7 |
| hypothetical protein | PH7735_02400 | Not Available | Negative | 2572978 - 2573439 | 17638.0 |
| hypothetical protein | PH7735_02401 | Not Available | Negative | 2573436 - 2573903 | 17699.9 |
| hypothetical protein | PH7735_02402 | Not Available | Negative | 2573914 - 2574345 | 16609.3 |
| hypothetical protein | PH7735_02403 | Not Available | Negative | 2574347 - 2576494 | 81652.1 |
| phage integrase family protein | PH7735_02404 | Not Available | Negative | 2576487 - 2578049 | 58426.3 |
| site-specific tyrosine recombinase xerd | PH7735_02405 | Not Available | Negative | 2578046 - 2579341 | 50132.0 |
| helix-destabilizing protein | PH7735_02406 | P56898 | Negative | 2579492 - 2580004 | 17911.7 |
| soluble lytic murein transglycosylase precursor | PH7735_02407 | O64046 | Positive | 2580210 - 2580797 | 21561.2 |
| methylamine utilization protein maug precursor | PH7735_02408 | Q51658 | Positive | 2580890 - 2582035 | 42083.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
