Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-dehydroquinate synthase | PH7735_02389 | Q5LSX9 | Positive | 2554069 - 2555181 | 39732.0 |
| tryptophan synthase beta chain | PH7735_02390 | Q7M9S1 | Positive | 2555393 - 2556598 | 43201.3 |
| peptidase t | PH7735_02391 | A4INW9 | Negative | 2556661 - 2557905 | 44907.1 |
| t5orf172 domain protein | PH7735_02392 | O34352 | Negative | 2558182 - 2559363 | 44164.4 |
| hypothetical protein | PH7735_02393 | O34469 | Negative | 2559356 - 2561401 | 76068.7 |
| hypothetical protein | PH7735_02394 | Not Available | Negative | 2561394 - 2562005 | 23419.0 |
| hypothetical protein | PH7735_02395 | Not Available | Negative | 2562299 - 2563342 | 39127.9 |
| hypothetical protein | PH7735_02396 | Not Available | Negative | 2563339 - 2564211 | 33065.1 |
| hypothetical protein | PH7735_02397 | O31504 | Negative | 2564208 - 2566949 | 102880.0 |
| putative bacteriocin export abc transporter, lactococcin 972 group | PH7735_02398 | Not Available | Negative | 2567345 - 2570218 | 108359.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
