Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tyrosine--trna ligase | PH7735_02379 | Q5LQK5 | Negative | 2543837 - 2545129 | 47475.8 |
| anhydro-n-acetylmuramic acid kinase | PH7735_02380 | Q5LQK6 | Positive | 2545193 - 2546299 | 38467.6 |
| hypothetical protein | PH7735_02381 | Not Available | Negative | 2546310 - 2546729 | 14981.7 |
| enolase | PH7735_02382 | Q1GI52 | Negative | 2546909 - 2548183 | 45283.8 |
| phosphonate utilization associated putative membrane protein | PH7735_02383 | Not Available | Negative | 2548393 - 2549292 | 31592.7 |
| magnesium and cobalt efflux protein corc | PH7735_02384 | P37908 | Negative | 2549416 - 2550750 | 48746.4 |
| tyrosine recombinase xerd | PH7735_02385 | Q89XW5 | Negative | 2550799 - 2551731 | 34925.8 |
| hypothetical protein | PH7735_02386 | Not Available | Negative | 2551735 - 2553249 | 54125.9 |
| hypothetical protein | PH7735_02387 | Not Available | Negative | 2553239 - 2553397 | 5576.93 |
| shikimate kinase | PH7735_02388 | Q5LSY0 | Positive | 2553520 - 2554068 | 20073.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
