Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_00199 | Not Available | Positive | 217044 - 218012 | 36877.6 |
| ribonuclease hi | PH7735_00200 | Q1GDG1 | Negative | 218019 - 218471 | 16289.4 |
| magnesium-protoporphyrin o-methyltransferase | PH7735_00201 | Not Available | Negative | 218464 - 219054 | 20873.8 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | PH7735_00202 | Q1GDG5 | Negative | 219108 - 220067 | 34751.8 |
| nyn domain protein | PH7735_00203 | Q31LZ8 | Negative | 220331 - 220903 | 21878.2 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase | PH7735_00204 | P72736 | Positive | 221035 - 221613 | 21360.8 |
| dna-directed rna polymerase subunit omega | PH7735_00205 | Q5LNK0 | Positive | 221690 - 222043 | 13141.3 |
| gtp pyrophosphokinase rsh | PH7735_00206 | Q8YG65 | Positive | 222067 - 224193 | 79757.2 |
| hypothetical protein | PH7735_00207 | Not Available | Positive | 224217 - 224882 | 24591.2 |
| pyridoxine 5'-phosphate synthase | PH7735_00208 | Q3V7J3 | Positive | 224956 - 225690 | 26814.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
