Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| leucine-responsive regulatory protein | PH7735_02369 | F8DT92 | Positive | 2533197 - 2533670 | 18004.7 |
| biotin biosynthesis cytochrome p450 | PH7735_02370 | O31785 | Negative | 2533712 - 2534902 | 44556.3 |
| c4-dicarboxylate transport sensor protein dctb | PH7735_02371 | Not Available | Positive | 2534954 - 2536705 | 63611.1 |
| c4-dicarboxylate transport transcriptional regulatory protein dctd | PH7735_02372 | Q9HU19 | Positive | 2536702 - 2537931 | 44492.0 |
| fatty acid desaturase | PH7735_02373 | O44186 | Negative | 2537961 - 2539055 | 41164.3 |
| capsular polysaccharide phosphotransferase sacb | PH7735_02374 | Q848R7 | Negative | 2539052 - 2540059 | 38358.8 |
| c4-dicarboxylate-binding periplasmic protein precursor | PH7735_02375 | Q9KQR9 | Positive | 2540402 - 2541406 | 36498.1 |
| 2,3-diketo-l-gulonate trap transporter small permease protein yiam | PH7735_02376 | Q9KQS0 | Positive | 2541502 - 2542167 | 25239.9 |
| neu5ac permease | PH7735_02377 | Q9KQS1 | Positive | 2542167 - 2543576 | 49163.6 |
| hypothetical protein | PH7735_02378 | Not Available | Positive | 2543519 - 2544001 | 17209.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
