Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gas vesicle protein gvpn | PH7735_02349 | Not Available | Positive | 2512652 - 2513524 | 32126.6 |
| vwa domain containing coxe-like protein | PH7735_02350 | Not Available | Positive | 2513585 - 2514838 | 46728.0 |
| putative transporter component | PH7735_02351 | Not Available | Positive | 2514955 - 2515509 | 19446.9 |
| hypothetical protein | PH7735_02352 | Not Available | Positive | 2515513 - 2516100 | 19886.1 |
| putative xanthine dehydrogenase subunit a | PH7735_02353 | P77183 | Positive | 2516289 - 2517257 | 33839.6 |
| putative molybdopterin biosynthesis protein moea/lysr substrate binding-domain-containing protein | PH7735_02354 | Not Available | Positive | 2517254 - 2518252 | 34753.4 |
| carbon monoxide dehydrogenase small chain | PH7735_02355 | P19921 | Positive | 2518523 - 2519008 | 16840.9 |
| carbon monoxide dehydrogenase large chain | PH7735_02356 | Not Available | Positive | 2519114 - 2521477 | 84032.0 |
| carbon monoxide dehydrogenase medium chain | PH7735_02357 | P19920 | Positive | 2521492 - 2522274 | 26461.0 |
| carboxymethylenebutenolidase | PH7735_02358 | Not Available | Negative | 2522337 - 2523074 | 26739.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
