Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hom_end-associated hint | PH7735_02319 | Not Available | Negative | 2483256 - 2484278 | 37364.5 |
| 3-oxoacyl-[acyl-carrier-protein] reductase fabg | PH7735_02320 | P43713 | Positive | 2484423 - 2485202 | 26465.8 |
| dna alkylation repair enzyme | PH7735_02321 | O07541 | Positive | 2485205 - 2486341 | 41925.3 |
| fe(3+) ions import atp-binding protein fbpc | PH7735_02322 | Q6D2F6 | Positive | 2486449 - 2487528 | 40222.3 |
| bifunctional biotin--[acetyl-coa-carboxylase] synthetase/biotin operon repressor | PH7735_02323 | Not Available | Negative | 2487532 - 2488200 | 24663.5 |
| twin arginine translocase protein a | PH7735_02324 | Q2ND30 | Positive | 2488403 - 2488621 | 7510.19 |
| sec-independent protein translocase protein tatb | PH7735_02325 | Q5LQ14 | Positive | 2488640 - 2489137 | 17438.7 |
| sec-independent protein translocase protein tatc | PH7735_02326 | D5AT98 | Positive | 2489134 - 2490081 | 34873.8 |
| putative atpase (aaa+ superfamily) | PH7735_02327 | Not Available | Positive | 2490285 - 2491127 | 31352.4 |
| murein hydrolase activator nlpd precursor | PH7735_02328 | Not Available | Negative | 2491195 - 2492415 | 42284.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
