Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh-quinone oxidoreductase subunit m | PH7735_02309 | P29925 | Positive | 2470896 - 2472443 | 56431.5 |
| nadh-quinone oxidoreductase subunit n | PH7735_02310 | Q28T49 | Positive | 2472459 - 2473901 | 51093.0 |
| bifunctional protein bira | PH7735_02311 | P29906 | Positive | 2474005 - 2474757 | 26819.8 |
| type iii pantothenate kinase | PH7735_02312 | Q5LPT8 | Positive | 2474775 - 2475551 | 28100.6 |
| ribonuclease j 1 | PH7735_02313 | M4MR97 | Positive | 2475548 - 2477215 | 60516.6 |
| hypothetical protein | PH7735_02314 | Not Available | Positive | 2477301 - 2478143 | 31524.8 |
| atp-dependent rna helicase rhle | PH7735_02315 | Not Available | Negative | 2478197 - 2479609 | 51682.1 |
| hypothetical protein | PH7735_02316 | Not Available | Negative | 2479781 - 2480725 | 35831.7 |
| hypothetical protein | PH7735_02317 | Not Available | Negative | 2480725 - 2481486 | 28785.8 |
| peptide chain release factor 3 | PH7735_02318 | Q8XPH8 | Negative | 2481534 - 2483141 | 59854.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
