Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_02299 | P29909 | Positive | 2462534 - 2462938 | 14336.2 |
| nadh-quinone oxidoreductase chain 3 | PH7735_02300 | P29915 | Positive | 2462942 - 2464954 | 72121.9 |
| hypothetical protein | PH7735_02301 | Not Available | Positive | 2464960 - 2465388 | 15153.0 |
| nadh-quinone oxidoreductase subunit h | PH7735_02302 | Q28T60 | Positive | 2465395 - 2466435 | 38422.3 |
| nadh-quinone oxidoreductase subunit i | PH7735_02303 | A8LIV0 | Positive | 2466438 - 2466932 | 19072.7 |
| 4-carboxymuconolactone decarboxylase | PH7735_02304 | P29911 | Positive | 2466929 - 2467330 | 14494.2 |
| 4-carboxymuconolactone decarboxylase | PH7735_02305 | P29912 | Positive | 2467327 - 2467734 | 14970.1 |
| nadh-quinone oxidoreductase subunit j | PH7735_02306 | P29922 | Positive | 2467731 - 2468339 | 21901.8 |
| nadh-quinone oxidoreductase subunit k | PH7735_02307 | Q5LPT3 | Positive | 2468416 - 2468721 | 10979.0 |
| nadh-quinone oxidoreductase subunit l | PH7735_02308 | P29924 | Positive | 2468728 - 2470896 | 79555.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
