Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mmge/prpd family protein | PH7735_02279 | Not Available | Negative | 2442904 - 2444214 | 46882.6 |
| l-glutamine:2-deoxy-scyllo-inosose aminotransferase | PH7735_02280 | P25048 | Positive | 2444368 - 2445561 | 43743.3 |
| inner membrane transport protein ybat | PH7735_02281 | Not Available | Negative | 2445595 - 2446881 | 45389.4 |
| acyl-coa dehydrogenase | PH7735_02282 | P12007 | Positive | 2446992 - 2448152 | 42005.2 |
| outer membrane protein w precursor | PH7735_02283 | P17266 | Negative | 2448239 - 2448841 | 21360.1 |
| hypothetical protein | PH7735_02284 | P26157 | Positive | 2448976 - 2449569 | 20588.4 |
| methylmalonyl-coa carboxyltransferase 12s subunit | PH7735_02285 | Q3ULD5 | Positive | 2449589 - 2451196 | 57197.4 |
| acetyl-/propionyl-coenzyme a carboxylase alpha chain | PH7735_02286 | Q54KE6 | Positive | 2451275 - 2453227 | 68345.6 |
| glutathione s-transferase gst-6.0 | PH7735_02287 | Not Available | Positive | 2453224 - 2453883 | 24747.7 |
| hydroxymethylglutaryl-coa lyase yngg | PH7735_02288 | Q29448 | Positive | 2453876 - 2454733 | 29481.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
