Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| threonine-phosphate decarboxylase | PH7735_00189 | P21633 | Negative | 209729 - 210679 | 34426.9 |
| osmolarity response regulator | PH7735_00190 | Not Available | Positive | 210853 - 211215 | 13597.3 |
| glutathionyl-hydroquinone reductase yqjg | PH7735_00191 | P42620 | Negative | 211274 - 212245 | 37282.5 |
| hypothetical protein | PH7735_00192 | Not Available | Positive | 212423 - 212776 | 13085.5 |
| l,d-transpeptidase catalytic domain | PH7735_00193 | Not Available | Negative | 212783 - 213331 | 20366.6 |
| cystathionine beta-lyase patb | PH7735_00194 | Q08432 | Negative | 213371 - 214543 | 43398.4 |
| peptide deformylase | PH7735_00195 | Q98D52 | Positive | 214636 - 215157 | 19498.7 |
| peptide deformylase | PH7735_00196 | B6JJP8 | Positive | 215189 - 215683 | 18595.5 |
| methionyl-trna formyltransferase | PH7735_00197 | Q5LNI8 | Positive | 215680 - 216585 | 31776.5 |
| hypothetical protein | PH7735_00198 | Not Available | Positive | 216598 - 216834 | 8343.46 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
