Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp-dependent malic enzyme | PH7735_02249 | O30807 | Negative | 2410295 - 2412574 | 81888.5 |
| cytidine deaminase | PH7735_02250 | Q9S3M0 | Positive | 2412780 - 2413172 | 13561.0 |
| thymidine phosphorylase | PH7735_02251 | Q8UJ08 | Positive | 2413177 - 2414481 | 44883.4 |
| phosphopentomutase | PH7735_02252 | B5ZXI4 | Positive | 2414481 - 2415692 | 42953.5 |
| adenine deaminase | PH7735_02253 | B9J6V8 | Positive | 2415689 - 2416675 | 36064.6 |
| uracil phosphoribosyltransferase | PH7735_02254 | A1B467 | Positive | 2416675 - 2417304 | 23062.2 |
| sporulation related domain protein | PH7735_02255 | Not Available | Positive | 2417512 - 2418951 | 50686.4 |
| hypothetical protein | PH7735_02256 | Not Available | Negative | 2418972 - 2419982 | 36598.6 |
| long-chain-fatty-acid--coa ligase | PH7735_02257 | Q8VZF1 | Negative | 2420107 - 2421735 | 59378.2 |
| carboxylate/amino acid/amine transporter | PH7735_02258 | Not Available | Positive | 2421845 - 2422753 | 32299.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
