Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_02239 | Not Available | Positive | 2397942 - 2399714 | 62294.6 |
| methylmalonyl-coa carboxyltransferase 12s subunit | PH7735_02240 | O86318 | Positive | 2399714 - 2401336 | 57316.6 |
| acetyl-/propionyl-coenzyme a carboxylase alpha chain | PH7735_02241 | P0A509 | Positive | 2401346 - 2403328 | 70305.7 |
| putative actinobacterial protein | PH7735_02242 | P9WM90 | Positive | 2403333 - 2404136 | 29346.6 |
| hypothetical protein | PH7735_02243 | Not Available | Positive | 2404241 - 2404426 | 6674.53 |
| esterase ybff | PH7735_02244 | Q8NFV4 | Negative | 2404471 - 2405229 | 28461.9 |
| hypothetical protein | PH7735_02245 | Not Available | Positive | 2405320 - 2405694 | 13781.4 |
| serine hydroxymethyltransferase 1 | PH7735_02246 | Q1GGA4 | Negative | 2405786 - 2407078 | 45964.6 |
| putative inorganic polyphosphate/atp-nad kinase | PH7735_02247 | Q3IZN1 | Positive | 2407259 - 2408020 | 27494.0 |
| acetyl-coenzyme a synthetase | PH7735_02248 | P28812 | Negative | 2408124 - 2410016 | 69158.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
