Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc-type molybdate transport system, atpase component | PH7735_02229 | Q89EW7 | Positive | 2386731 - 2387228 | 18047.6 |
| hypothetical protein | PH7735_02230 | Not Available | Negative | 2387266 - 2389197 | 70745.5 |
| vcbs repeat | PH7735_02231 | Not Available | Negative | 2389311 - 2390258 | 34098.9 |
| hemolysin-activating lysine-acyltransferase hlyc | PH7735_02232 | Not Available | Negative | 2390259 - 2390762 | 18402.2 |
| hypothetical protein | PH7735_02233 | Not Available | Negative | 2390886 - 2391197 | 11573.6 |
| kynureninase | PH7735_02234 | P83788 | Positive | 2391751 - 2392944 | 43024.0 |
| glycerol operon regulatory protein | PH7735_02235 | Not Available | Negative | 2392920 - 2393612 | 24229.3 |
| cytochrome p450 116 | PH7735_02236 | P43492 | Positive | 2393697 - 2396003 | 85275.6 |
| fatty acid metabolism regulator protein | PH7735_02237 | P94548 | Negative | 2395998 - 2396657 | 25247.2 |
| acyl-coa dehydrogenase | PH7735_02238 | Q50LG2 | Negative | 2396660 - 2397802 | 41124.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
