Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fumarate and nitrate reduction regulatory protein | PH7735_02219 | Not Available | Negative | 2378740 - 2379441 | 25774.1 |
| hypothetical protein | PH7735_02220 | Not Available | Positive | 2379668 - 2380039 | 13852.0 |
| ferredoxin-type protein | PH7735_02221 | P0AAL2 | Positive | 2380036 - 2380539 | 18121.5 |
| assembly protein for periplasmic nitrate reductase | PH7735_02222 | Not Available | Positive | 2380533 - 2380802 | 9829.7 |
| periplasmic nitrate reductase precursor | PH7735_02223 | A8LLY9 | Positive | 2380819 - 2383308 | 93355.3 |
| quinol dehydrogenase periplasmic component | PH7735_02224 | P0AAL4 | Positive | 2383332 - 2384195 | 30542.6 |
| putative electron transport protein yccm | PH7735_02225 | P44653 | Positive | 2384192 - 2385115 | 33880.7 |
| diheme cytochrome c napb | PH7735_02226 | Q8VU46 | Positive | 2385138 - 2385578 | 16317.0 |
| cytochrome c-type protein napc | PH7735_02227 | P0ABL7 | Positive | 2385611 - 2386336 | 27964.2 |
| hypothetical protein | PH7735_02228 | Not Available | Positive | 2386341 - 2386598 | 8598.99 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
