Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_02189 | Q5LUS9 | Positive | 2354194 - 2354484 | 10415.7 |
| hypothetical protein | PH7735_02190 | Not Available | Positive | 2354752 - 2355033 | 9731.0 |
| hypothetical protein | PH7735_02191 | Not Available | Positive | 2355101 - 2355592 | 17604.4 |
| nad-dependent protein deacylase | PH7735_02192 | Q9A2S6 | Negative | 2355686 - 2356384 | 25045.3 |
| 2-keto-3-deoxy-galactonokinase | PH7735_02193 | Not Available | Positive | 2356504 - 2357199 | 23929.5 |
| low molecular weight protein-tyrosine-phosphatase yfkj | PH7735_02194 | O35016 | Positive | 2357199 - 2357633 | 15811.4 |
| aminomethyltransferase | PH7735_02195 | Q9UI17 | Negative | 2357640 - 2360042 | 87405.6 |
| trimethylamine:corrinoid methyltransferase | PH7735_02196 | Not Available | Positive | 2360230 - 2361765 | 54868.4 |
| hth-type transcriptional activator cmpr | PH7735_02197 | Not Available | Negative | 2361771 - 2362736 | 35622.4 |
| sulfopropanediol 3-dehydrogenase | PH7735_02198 | Q5LUS2 | Positive | 2362829 - 2364136 | 46617.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
