Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetylornithine aminotransferase | PH7735_02179 | P30900 | Positive | 2341753 - 2342934 | 41612.8 |
| ornithine carbamoyltransferase | PH7735_02180 | A1B3N7 | Positive | 2342939 - 2343865 | 34100.7 |
| 2-dehydropantoate 2-reductase | PH7735_02181 | Q9HRF0 | Positive | 2344145 - 2345173 | 37486.9 |
| 6-phosphogluconate dehydrogenase, nadp(+)-dependent, decarboxylating | PH7735_02182 | P21577 | Positive | 2345262 - 2346677 | 50383.1 |
| sulfate permease cysp | PH7735_02183 | O26024 | Negative | 2346742 - 2348226 | 51942.4 |
| putative ntp pyrophosphohydrolase | PH7735_02184 | Not Available | Negative | 2348319 - 2348777 | 17387.1 |
| atp-dependent rna helicase hrpb | PH7735_02185 | P37024 | Negative | 2348865 - 2351318 | 89633.2 |
| hypothetical protein | PH7735_02186 | Not Available | Negative | 2351361 - 2351981 | 22229.4 |
| putative gtpase/mt1543 | PH7735_02187 | P37895 | Positive | 2352163 - 2353140 | 35402.6 |
| hypothetical protein | PH7735_02188 | Not Available | Positive | 2353137 - 2353934 | 29599.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
