Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carnitine catabolism transcriptional activator | PH7735_02169 | Not Available | Negative | 2332913 - 2333941 | 37316.8 |
| 3-keto-5-aminohexanoate cleavage enzyme | PH7735_02170 | Q8RHX2 | Positive | 2333972 - 2334889 | 32519.2 |
| hypothetical protein | PH7735_02171 | Not Available | Positive | 2334957 - 2335301 | 11967.4 |
| l-carnitine dehydrogenase | PH7735_02172 | Q5LTH8 | Positive | 2335318 - 2336793 | 53939.7 |
| 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase | PH7735_02173 | Q988B7 | Positive | 2336793 - 2337563 | 27160.4 |
| helix-turn-helix | PH7735_02174 | Not Available | Negative | 2337567 - 2338361 | 29480.2 |
| hypothetical protein | PH7735_02175 | Not Available | Positive | 2338534 - 2338737 | 7339.13 |
| fatty acid desaturase | PH7735_02176 | Not Available | Positive | 2338730 - 2339638 | 35347.2 |
| phosphonate utilization associated putative membrane protein | PH7735_02177 | Not Available | Positive | 2339659 - 2340564 | 31674.9 |
| carboxylate/amino acid/amine transporter | PH7735_02178 | Not Available | Negative | 2340578 - 2341453 | 30738.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
