Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent clp protease atp-binding subunit clpa | PH7735_02139 | Not Available | Negative | 2306230 - 2307075 | 32096.5 |
| dnak suppressor protein | PH7735_02140 | P0CAU3 | Positive | 2307392 - 2307865 | 18392.3 |
| 6-hydroxynicotinate 3-monooxygenase precursor | PH7735_02141 | Q88FY2 | Positive | 2307936 - 2309108 | 42603.4 |
| exodeoxyribonuclease iii | PH7735_02142 | Not Available | Negative | 2309127 - 2309930 | 30180.6 |
| hypothetical protein | PH7735_02143 | Not Available | Positive | 2310329 - 2310892 | 18773.8 |
| hypothetical protein | PH7735_02144 | Not Available | Positive | 2310954 - 2312027 | 40536.0 |
| carboxylate/amino acid/amine transporter | PH7735_02145 | Not Available | Positive | 2312038 - 2312970 | 33674.5 |
| iron-sulfur cluster insertion protein erpa | PH7735_02146 | Q60AU6 | Negative | 2312982 - 2313305 | 11239.3 |
| deoxyguanosinetriphosphate triphosphohydrolase | PH7735_02147 | A4WRT4 | Positive | 2313408 - 2314565 | 43275.1 |
| arginine--trna ligase | PH7735_02148 | Q5LQI6 | Positive | 2314625 - 2316370 | 63857.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
